DDA quantification - peptidoform level (QExactive)

This module compares the sensitivity and quantification accuracy for data acquired with data-dependent acquisition (DDA) on a Q Exactive HF-X Orbitrap (Thermo Fisher). It is based on the DDA quantification module “ion-level” described here. Data and metrics are the same, the difference is that in this module we focus on peptidoform quantities summarised from the precursor ion quantities.

How to use

Click here if you want to submit your results or when you want to explore the module.

Important Tool-specific settings

Table 2 provides an overview of the required input files for public submission.

Table 2. Overview of input files required for metric calculation and public submission

Tool	Input file	Parameter File
Custom	custom_input.tsv
PEAKS	lfq.features.csv	*.txt
WOMBAT	*.csv	config.yaml

We are working on the documentation: more information comming soon.