webinterface.pages.pages_variables.DeNovo.DDA_HCD_variables module

Variables for the DDA de novo identification module.

class webinterface.pages.pages_variables.DeNovo.DDA_HCD_variables.VariablesDDADeNovo(all_datapoints: str = 'all_datapoints_dda_hcd_denovo', all_datapoints_submission: str = 'all_datapoints_submission_dda_hcd_denovo', input_df_submission: str = 'input_df_submission_dda_hcd_denovo', result_performance_submission: str = 'result_performance_submission_dda_hcd_denovo', submit: str = 'submit_dda_hcd_denovo', fig_metric: str = 'fig_metric_dda_hcd_denovo', metric_plot_labels: List[str] = <factory>, fig_ptm_overview: str = 'fig_ptm_overview_dda_hcd_denovo', fig_ptm_specific: str = 'fig_ptm_specific_dda_hcd_denovo', fig_spectrum_feature: str = 'fig_spectrum_feature_dda_hcd_denovo', fig_species_overview: str = 'fig_species_overview_dda_hcd_denovo', evaluation_mode_toggle_tab3_features: str = 'evaluation_mode_toggle_tab3_features_dda_hcd_denovo', evaluation_mode_toggle_tab3_species: str = 'evaluation_mode_toggle_tab3_species_dda_hcd_denovo', fig_metric_submitted: str = 'fig_metric_dda_hcd_denovo_submitted', uploaded_id: str = 'Uploaded dataset', result_perf: str = 'result_perf_dda_hcd_denovo', meta_data: str = 'meta_data_dda_hcd_denovo', input_df: str = 'input_df_dda_hcd_denovo', meta_file_uploader_uuid: str = 'meta_file_uploader_uuid_dda_hcd_denovo', comments_submission_uuid: str = 'comments_submission_uuid_dda_hcd_denovo', check_submission_uuid: str = 'check_submission_uuid_dda_hcd_denovo', meta_data_text: str = 'comments_for_submission_dda_hcd_denovo', check_submission: str = 'check_submission_dda_hcd_denovo', button_submission_uuid: str = 'button_submission_uuid_dda_hcd_denovo', df_head: str = 'df_head_dda_hcd_denovo', placeholder_fig_compare: str = 'placeholder_fig_compare_dda_hcd_denovo', all_datapoints_submitted: str = 'all_datapoints_submitted_dda_hcd_denovo', placeholder_table_submitted: str = 'placeholder_table_submitted_dda_hcd_denovo', placeholder_slider_submitted: str = 'placeholder_slider_submitted_dda_hcd_denovo', highlight_list_submitted: List[str] = <factory>, selectbox_id_submitted_uuid: str = 'selectbox_id_submitted_dda_hcd_denovo', selectbox_id_uuid: str = 'selectbox_id_dda_hcd_denovo', radio_level_id_uuid: str = 'radio_level_id_dda_hcd_denovo', radio_evaluation_id_uuid: str = 'radio_evaluation_id_dda_hcd_denovo', radio_level_id_submitted_uuid: str = 'radio_level_id_submitted_dda_hcd_denovo', radio_evaluation_id_submitted_uuid: str = 'radio_evaluation_id_submitted_dda_hcd_denovo', download_selector_id_uuid: str = 'download_selector_id_dda_hcd_denovo', table_id_uuid: str = 'table_id_dda_hcd_denovo', placeholder_table: str = 'placeholder_table_dda_hcd_denovo', placeholder_slider: str = 'placeholder_slider_dda_hcd_denovo', placeholder_dataset_selection_container: str = 'placeholder_dataset_selection_container_dda_hcd_denovo', dataset_selector_id_uuid: str = 'dataset_selector_id_dda_hcd_denovo', placeholder_downloads_container: str = 'placeholder_downloads_container_dda_hcd_denovo', highlight_list: List[str] = <factory>, first_new_plot: bool = True, beta_warning: bool = False, alpha_warning: bool = True, github_link_pr: str = 'github.com/Proteobot/Results_denovo_lfq_DDA_HCD.git', description_module_md: str = 'pages/markdown_files/DeNovo/DDA/introduction_DDA_quan_ions.md', description_files_md: str = 'pages/markdown_files/DeNovo/DDA/file_description.md', description_input_file_md: str = 'pages/markdown_files/DeNovo/DDA/input_file_description.md', description_radios_md: str = 'pages/markdown_files/DeNovo/DDA/radios_description.md', description_table_md: str = 'pages/markdown_files/DeNovo/DDA/table_description.md', description_results_md: str = 'pages/markdown_files/DeNovo/DDA/result_description.md', description_submission_md: str = 'pages/markdown_files/DeNovo/DDA/submit_description.md', parse_settings_dir: str = '../proteobench/io/parsing/io_parse_settings/denovo/DDA/HCD', texts: Type[WebpageTexts] = <class 'pages.texts.generic_texts_denovo.WebpageTexts'>, doc_url: str = 'https://proteobench.readthedocs.io/en/latest/available-modules/11-denovo-dda-hcd/', additional_params_json: str = '../proteobench/io/params/json/denovo/denovo_DDA_HCD.json', title: str = 'De Novo Identification (DDA - HCD) Module -ALPHA-', prefix_params: str = 'ion_dda_hcd_denovo_', params_json_dict: str = 'params_json_dict_ion_dda_hcd_denovo', params_file_dict: str = 'params_file_dict_ion_dda_hcd_denovo', sidebar_label: str = 'De novo DDA peptidoform', sidebar_path: str = '/denovo_DDA_HCD', sidebar_category: str = 'DDA', keywords: List[str] = <factory>)

Bases: object

Variables for the DDA de novo identification module.

additional_params_json: str = '../proteobench/io/params/json/denovo/denovo_DDA_HCD.json'

all_datapoints: str = 'all_datapoints_dda_hcd_denovo'

all_datapoints_submission: str = 'all_datapoints_submission_dda_hcd_denovo'

all_datapoints_submitted: str = 'all_datapoints_submitted_dda_hcd_denovo'

alpha_warning: bool = True

beta_warning: bool = False

button_submission_uuid: str = 'button_submission_uuid_dda_hcd_denovo'

check_submission: str = 'check_submission_dda_hcd_denovo'

check_submission_uuid: str = 'check_submission_uuid_dda_hcd_denovo'

comments_submission_uuid: str = 'comments_submission_uuid_dda_hcd_denovo'

dataset_selector_id_uuid: str = 'dataset_selector_id_dda_hcd_denovo'

default_evaluation = 'Mass-based'

default_level = 'Precision'

description_files_md: str = 'pages/markdown_files/DeNovo/DDA/file_description.md'

description_input_file_md: str = 'pages/markdown_files/DeNovo/DDA/input_file_description.md'

description_module_md: str = 'pages/markdown_files/DeNovo/DDA/introduction_DDA_quan_ions.md'

description_radios_md: str = 'pages/markdown_files/DeNovo/DDA/radios_description.md'

description_results_md: str = 'pages/markdown_files/DeNovo/DDA/result_description.md'

description_submission_md: str = 'pages/markdown_files/DeNovo/DDA/submit_description.md'

description_table_md: str = 'pages/markdown_files/DeNovo/DDA/table_description.md'

df_head: str = 'df_head_dda_hcd_denovo'

doc_url: str = 'https://proteobench.readthedocs.io/en/latest/available-modules/11-denovo-dda-hcd/'

download_selector_id_uuid: str = 'download_selector_id_dda_hcd_denovo'

evaluation_mode_toggle_tab3_features: str = 'evaluation_mode_toggle_tab3_features_dda_hcd_denovo'

evaluation_mode_toggle_tab3_species: str = 'evaluation_mode_toggle_tab3_species_dda_hcd_denovo'

fig_metric: str = 'fig_metric_dda_hcd_denovo'

fig_metric_submitted: str = 'fig_metric_dda_hcd_denovo_submitted'

fig_ptm_overview: str = 'fig_ptm_overview_dda_hcd_denovo'

fig_ptm_specific: str = 'fig_ptm_specific_dda_hcd_denovo'

fig_species_overview: str = 'fig_species_overview_dda_hcd_denovo'

fig_spectrum_feature: str = 'fig_spectrum_feature_dda_hcd_denovo'

first_new_plot: bool = True

github_link_pr: str = 'github.com/Proteobot/Results_denovo_lfq_DDA_HCD.git'

highlight_list: List[str]

highlight_list_submitted: List[str]

input_df: str = 'input_df_dda_hcd_denovo'

input_df_submission: str = 'input_df_submission_dda_hcd_denovo'

keywords: List[str]

meta_data: str = 'meta_data_dda_hcd_denovo'

meta_data_text: str = 'comments_for_submission_dda_hcd_denovo'

meta_file_uploader_uuid: str = 'meta_file_uploader_uuid_dda_hcd_denovo'

metric_plot_labels: List[str]

params_file_dict: str = 'params_file_dict_ion_dda_hcd_denovo'

params_json_dict: str = 'params_json_dict_ion_dda_hcd_denovo'

parse_settings_dir: str = '../proteobench/io/parsing/io_parse_settings/denovo/DDA/HCD'

placeholder_dataset_selection_container: str = 'placeholder_dataset_selection_container_dda_hcd_denovo'

placeholder_downloads_container: str = 'placeholder_downloads_container_dda_hcd_denovo'

placeholder_fig_compare: str = 'placeholder_fig_compare_dda_hcd_denovo'

placeholder_slider: str = 'placeholder_slider_dda_hcd_denovo'

placeholder_slider_submitted: str = 'placeholder_slider_submitted_dda_hcd_denovo'

placeholder_table: str = 'placeholder_table_dda_hcd_denovo'

placeholder_table_submitted: str = 'placeholder_table_submitted_dda_hcd_denovo'

prefix_params: str = 'ion_dda_hcd_denovo_'

radio_evaluation_id_submitted_uuid: str = 'radio_evaluation_id_submitted_dda_hcd_denovo'

radio_evaluation_id_uuid: str = 'radio_evaluation_id_dda_hcd_denovo'

radio_level_id_submitted_uuid: str = 'radio_level_id_submitted_dda_hcd_denovo'

radio_level_id_uuid: str = 'radio_level_id_dda_hcd_denovo'

result_perf: str = 'result_perf_dda_hcd_denovo'

result_performance_submission: str = 'result_performance_submission_dda_hcd_denovo'

selectbox_id_submitted_uuid: str = 'selectbox_id_submitted_dda_hcd_denovo'

selectbox_id_uuid: str = 'selectbox_id_dda_hcd_denovo'

sidebar_category: str = 'DDA'

sidebar_label: str = 'De novo DDA peptidoform'

sidebar_path: str = '/denovo_DDA_HCD'

submit: str = 'submit_dda_hcd_denovo'

table_id_uuid: str = 'table_id_dda_hcd_denovo'

texts

alias of WebpageTexts

title: str = 'De Novo Identification (DDA - HCD) Module -ALPHA-'

uploaded_id: str = 'Uploaded dataset'