proteobench.io.params.sage module#

Sage parameter extraction.

proteobench.io.params.sage.extract_params(fname: str | Path, json_file='/home/docs/checkouts/readthedocs.org/user_builds/proteobench/envs/v0.15.0/lib/python3.11/site-packages/proteobench/io/params/json/Quant/quant_lfq_DDA_ion.json') → ProteoBenchParameters[source]#

Parse Sage quantification tool JSON parameter file and extract relevant parameters.

Parameters:

fname (str or pathlib.Path) – The path to the Sage JSON parameter file.

Returns:

The extracted parameters as a ProteoBenchParameters object.

Return type:

ProteoBenchParameters