Benchmarking Modules#
Here you find the modules and their documentation in ProteoBench.
Each module documentation includes:
links to the raw data
fasta files
which files to upload
which search parameters we suggest (feel free to deviate!)
what the module is meant to benchmark
which metrics we calculate
and more!
If you want to jump right into looking at public results, or uploading your own results, you can go to https://proteobench.cubimed.rub.de/ and click on the module you are interested in. You can also find the links to the webserver in the module documentations below.
Are you looking for…#
…an example module to get started?#
beta
LFQ of precursor ions with DDA (QExactive)
…a quantification module for DIA data?#
beta
LFQ of precursor ions with DIA-PASEF
beta
LFQ of precursor ions with Astral data
beta
LFQ of precursor ions with ZenoTOF 8600 - ZenoSWATH data
…a quantification module for DDA data?#
beta
LFQ of precursor ions with DDA (QExactive)
beta
LFQ of peptidoforms with DDA (QExactive)
beta
LFQ of precursor ions with Astral data
… Identification modules?#
De novo identification
…a usecase specific module?#
alpha
Single cell LFQ, DIA
alpha
Human Plasma LFQ, DIA
…an archived module?#
archived
LFQ of precursor ions with DIA, AIF