Index C | D | E | F | G | I | M | P | S C calculate_benchmarking_metric_1() (proteobench.modules.template.datapoint.Datapoint method) calculate_benchmarking_metric_2() (proteobench.modules.template.datapoint.Datapoint method) convert_to_standard_format() (proteobench.modules.template.parse.ParseInputs method) D Datapoint (class in proteobench.modules.template.datapoint) dump_json_object() (proteobench.modules.template.datapoint.Datapoint method) E enzyme_name (proteobench.modules.template.datapoint.Datapoint attribute) F fdr_peptide (proteobench.modules.template.datapoint.Datapoint attribute) fdr_protein (proteobench.modules.template.datapoint.Datapoint attribute) fdr_psm (proteobench.modules.template.datapoint.Datapoint attribute) fragment_tol (proteobench.modules.template.datapoint.Datapoint attribute) fragment_tol_unit (proteobench.modules.template.datapoint.Datapoint attribute) G generate_id() (proteobench.modules.template.datapoint.Datapoint method) I id (proteobench.modules.template.datapoint.Datapoint attribute) is_temporary (proteobench.modules.template.datapoint.Datapoint attribute) M max_pep_length (proteobench.modules.template.datapoint.Datapoint attribute) MBR (proteobench.modules.template.datapoint.Datapoint attribute) min_pep_length (proteobench.modules.template.datapoint.Datapoint attribute) missed_cleavages (proteobench.modules.template.datapoint.Datapoint attribute) module proteobench.modules.template.datapoint proteobench.modules.template.parse proteobench.modules.template.parse_settings P ParseInputs (class in proteobench.modules.template.parse) ParseSettings (class in proteobench.modules.template.parse_settings) precursor_tol (proteobench.modules.template.datapoint.Datapoint attribute) precursor_tol_unit (proteobench.modules.template.datapoint.Datapoint attribute) proteobench.modules.template.datapoint module proteobench.modules.template.parse module proteobench.modules.template.parse_settings module S search_engine (proteobench.modules.template.datapoint.Datapoint attribute) software_version (proteobench.modules.template.datapoint.Datapoint attribute)