Source code for webinterface.pages.7_denovo_DDA_HCD

"""
Streamlit UI for the DDA quantification - precursor ions module.
"""

import logging
import uuid
from typing import Any, Dict, Type

import pages.texts.proteobench_builder as pbb
import pandas as pd
import streamlit as st
from pages.base import BaseStreamlitUI
from pages.base_pages.denovo import DeNovoUIObjects
from pages.pages_variables.DeNovo.DDA_HCD_variables import VariablesDDADeNovo
from pages.texts.generic_texts import WebpageTexts

from proteobench.io.parsing.parse_settings import ParseSettingsBuilder
from proteobench.modules.denovo.denovo_DDA_HCD import DDAHCDDeNovoModule




class StreamlitUI(BaseStreamlitUI):
    """
    Streamlit UI for the DDA de novo identification module.
    """

    def __init__(self, **kwargs):
        """
        Initialize the Streamlit UI for the DDA de novo identification module.
        """
        super().__init__(**kwargs)



    def main_page(self) -> None:
        """
        Set up the main page layout for the Streamlit application.
        """
        # Create tabs
        (
            tab_results_all,
            tab_submission_details,
            tab_indepth_plots,
            tab_results_new,
            tab_public_submission,
        ) = st.tabs(
            [
                "View Public Results",
                "Upload New Results (Private)",
                "View Results in-depth",
                "View Public + New Results",
                "Submit New Results",
            ]
        )

        with tab_results_all:
            st.title(self.variables.title)
            st.link_button(
                "Go to module documentation",
                url=self.variables.doc_url,
                type="secondary",
                help="link to the module documentation",
            )
            if self.variables.beta_warning:
                st.warning(
                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            if self.variables.alpha_warning:
                st.warning(
                    "This module is in ALPHA phase. The figure presented below and the metrics calculation may change in the near future."
                )

            self.uiobjects.display_all_data_results_main()

        # Tab 2: Submission Details
        with tab_submission_details:
            st.title(self.variables.title)

            st.link_button(
                "Go to module documentation",
                url=self.variables.doc_url,
                type="secondary",
                help="link to the module documentation",
            )
            if self.variables.beta_warning:
                st.warning(
                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            if self.variables.alpha_warning:
                st.warning(
                    "This module is in ALPHA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            self.uiobjects.display_submission_form()

        # Tab 2.5: in-depth plots current data
        with tab_indepth_plots:
            st.title(self.variables.title)

            st.link_button(
                "Go to module documentation",
                url=self.variables.doc_url,
                type="secondary",
                help="link to the module documentation",
            )
            if self.variables.beta_warning:
                st.warning(
                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            if self.variables.alpha_warning:
                st.warning(
                    "This module is in ALPHA phase. The figure presented below and the metrics calculation may change in the near future."
                )

            self.uiobjects.display_indepth_plots()

        # Tab 3: Results (New Submissions)
        with tab_results_new:
            st.title(self.variables.title)
            st.link_button(
                "Go to module documentation",
                url=self.variables.doc_url,
                type="secondary",
                help="link to the module documentation",
            )
            if self.variables.beta_warning:
                st.warning(
                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            if self.variables.alpha_warning:
                st.warning(
                    "This module is in ALPHA phase. The figure presented below and the metrics calculation may change in the near future."
                )

            self.uiobjects.display_all_data_results_submitted()

        # Tab 4: Public Submission
        with tab_public_submission:
            st.title(self.variables.title)
            st.link_button(
                "Go to module documentation",
                url=self.variables.doc_url,
                type="secondary",
                help="link to the module documentation",
            )
            if self.variables.beta_warning:
                st.warning(
                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            if self.variables.alpha_warning:
                st.warning(
                    "This module is in ALPHA phase. The figure presented below and the metrics calculation may change in the near future."
                )
            self.uiobjects.display_public_submission_ui()




if __name__ == "__main__":
    logging.basicConfig(format="%(levelname)s:%(message)s", level=logging.INFO)
    # Instantiate and run the extended UI class
    st_ui = StreamlitUI(
        variables=VariablesDDADeNovo(),
        texts=WebpageTexts,
        ionmodule=DDAHCDDeNovoModule,
        parsesettingsbuilder=ParseSettingsBuilder,
        uiobjects=DeNovoUIObjects,
        page_name="De novo DDA-HCD peptidoform",
    )
    st_ui.main_page()