All modules for which code is available

• proteobench.datapoint.datapoint_base
• proteobench.datapoint.denovo_datapoint
• proteobench.datapoint.quant_datapoint
• proteobench.exceptions
• proteobench.github.gh
• proteobench.io.params
• proteobench.io.params.adanovo
• proteobench.io.params.alphadia
• proteobench.io.params.alphapept
• proteobench.io.params.casanovo
• proteobench.io.params.deepnovo
• proteobench.io.params.diann
• proteobench.io.params.fragger
• proteobench.io.params.i2masschroq
• proteobench.io.params.instanovo
• proteobench.io.params.maxquant
• proteobench.io.params.metamorpheus
• proteobench.io.params.msaid
• proteobench.io.params.msangel
• proteobench.io.params.peaks
• proteobench.io.params.pihelixnovo
• proteobench.io.params.piprimenovo
• proteobench.io.params.pointnovo
• proteobench.io.params.proline
• proteobench.io.params.quantms
• proteobench.io.params.sage
• proteobench.io.params.spectronaut
• proteobench.io.params.wombat
• proteobench.io.parsing.parse_denovo
• proteobench.io.parsing.parse_ion
• proteobench.io.parsing.parse_peptidoform
• proteobench.io.parsing.parse_settings
• proteobench.io.parsing.utils
• proteobench.modules.denovo.denovo_DDA_HCD
• proteobench.modules.denovo.denovo_base
• proteobench.modules.quant.benchmarking
• proteobench.modules.quant.quant_base_module
• proteobench.modules.quant.quant_lfq_ion_DDA_Astral
• proteobench.modules.quant.quant_lfq_ion_DDA_QExactive
• proteobench.modules.quant.quant_lfq_ion_DIA_AIF
• proteobench.modules.quant.quant_lfq_ion_DIA_Astral
• proteobench.modules.quant.quant_lfq_ion_DIA_ZenoTOF
• proteobench.modules.quant.quant_lfq_ion_DIA_diaPASEF
• proteobench.modules.quant.quant_lfq_ion_DIA_singlecell
• proteobench.modules.quant.quant_lfq_peptidoform_DDA
• proteobench.modules.quant.quant_lfq_peptidoform_DIA
• proteobench.modules.rescoring.module_rescoring
• proteobench.plotting.plot_denovo
• proteobench.plotting.plot_generator_base
• proteobench.plotting.plot_generator_lfq_HYE
• proteobench.score.denovo.denovoscores
• proteobench.score.quant.quantscores
• proteobench.score.quant.score_base
• proteobench.utils.server_io
• proteobench.utils.submission
• webinterface.Home
• webinterface.UI_utils
• webinterface.pages.7_denovo_DDA_HCD
• webinterface.pages.base
• webinterface.pages.base_pages.banner
• webinterface.pages.base_pages.base
• webinterface.pages.base_pages.denovo
• webinterface.pages.base_pages.denovo_tabs.tab1
• webinterface.pages.base_pages.denovo_tabs.tab2
• webinterface.pages.base_pages.denovo_tabs.tab3
• webinterface.pages.base_pages.denovo_tabs.tab4
• webinterface.pages.base_pages.quant
• webinterface.pages.base_pages.quant_tabs.filter
• webinterface.pages.base_pages.quant_tabs.inputs
• webinterface.pages.base_pages.quant_tabs.metricplot
• webinterface.pages.base_pages.quant_tabs.resulttable
• webinterface.pages.base_pages.quant_tabs.tab1_results
• webinterface.pages.base_pages.quant_tabs.tab2_form_upload_data
• webinterface.pages.base_pages.quant_tabs.tab3_indepth_plots
• webinterface.pages.base_pages.quant_tabs.tab4_display_results_submitted
• webinterface.pages.base_pages.quant_tabs.tab5_public_submission
• webinterface.pages.base_pages.quant_tabs.tab_compare_workflows
• webinterface.pages.pages_variables.DeNovo.DDA_HCD_variables
• webinterface.pages.pages_variables.Quant.lfq_DDA_ion_Astral_variables
• webinterface.pages.pages_variables.Quant.lfq_DDA_ion_QExactive_variables
• webinterface.pages.pages_variables.Quant.lfq_DDA_peptidoform_variables
• webinterface.pages.pages_variables.Quant.lfq_DIA_ion_AIF_variables
• webinterface.pages.pages_variables.Quant.lfq_DIA_ion_Astral_variables
• webinterface.pages.pages_variables.Quant.lfq_DIA_ion_ZenoTOF_variables
• webinterface.pages.pages_variables.Quant.lfq_DIA_ion_diaPASEF_variables
• webinterface.pages.pages_variables.Quant.lfq_DIA_ion_singlecell_variables
• webinterface.pages.texts.generic_texts
• webinterface.pages.texts.generic_texts_denovo
• webinterface.pages.texts.generic_texts_dia
• webinterface.pages.texts.proteobench_builder
• webinterface.pages.utils.module_registry
• webinterface.streamlit_utils